MRIQC: individual T1w report

Summary

Subject ID: 014_ExercisePre.
Date and time: 2018-05-06, 21:40.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.26459356205142853
cnr			4.753817046907553
efc			0.5666938650827731
fber			102.44223022460938
fwhm	avg		3.8352766666666667
fwhm	x		3.71191
fwhm	y		4.01543
fwhm	z		3.77849
icvs	csf		0.19458937313410582
icvs	gm		0.4728804133488044
icvs	wm		0.33253021351708983
inu	med		1.1470003128051758
inu	range		0.3131332993507385
qi	1		0.0
qi	2		0.0005613989548261594
rpve	csf		30.128007657610137
rpve	gm		14.172842963794595
rpve	wm		22.83359718352095
size	x		180
size	y		256
size	z		256
snr	csf		2.464562111453183
snr	gm		10.671629730475182
snr	total		10.557492868263026
snr	wm		18.536286762860712
snrd	csf		14.08377792580835
snrd	gm		31.548866978823945
snrd	total		32.21658540514742
snrd	wm		51.017111310809966
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.73251550119629
summary	bg	mad	12.841580390930176
summary	bg	mean	50.010013580322266
summary	bg	median	48.9879264831543
summary	bg	n	3012501.0
summary	bg	p05	30.592838287353516
summary	bg	p95	73.11499786376953
summary	bg	stdv	13.246988296508789
summary	csf	k	0.40638290638274777
summary	csf	mad	122.57891845703125
summary	csf	mean	282.5616760253906
summary	csf	median	276.0615539550781
summary	csf	n	8768.0
summary	csf	p05	117.33593673706055
summary	csf	p95	465.72814178466797
summary	csf	stdv	112.00602722167969
summary	gm	k	0.41049977785764913
summary	gm	mad	55.709022521972656
summary	gm	mean	619.580810546875
summary	gm	median	618.4014892578125
summary	gm	n	33768.0
summary	gm	p05	527.7219879150391
summary	gm	p95	717.9418487548828
summary	gm	stdv	57.94731903076172
summary	wm	k	1.4461784159918771
summary	wm	mad	45.261085510253906
summary	wm	mean	994.5759887695312
summary	wm	median	1000.0060424804688
summary	wm	n	143676.0
summary	wm	p05	892.3433685302734
summary	wm	p95	1071.5409240722656
summary	wm	stdv	53.9483757019043
tpm	overlap	csf	0.221213698387146
tpm	overlap	gm	0.5406021475791931
tpm	overlap	wm	0.5441676378250122
wm2max			0.5998018771187853

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	e7494ef876c5450d19bb6751242556c5
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.