MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.26459356205142853
cnr4.753817046907553
efc0.5666938650827731
fber102.44223022460938
fwhmavg3.8352766666666667
fwhmx3.71191
fwhmy4.01543
fwhmz3.77849
icvscsf0.19458937313410582
icvsgm0.4728804133488044
icvswm0.33253021351708983
inumed1.1470003128051758
inurange0.3131332993507385
qi10.0
qi20.0005613989548261594
rpvecsf30.128007657610137
rpvegm14.172842963794595
rpvewm22.83359718352095
sizex180
sizey256
sizez256
snrcsf2.464562111453183
snrgm10.671629730475182
snrtotal10.557492868263026
snrwm18.536286762860712
snrdcsf14.08377792580835
snrdgm31.548866978823945
snrdtotal32.21658540514742
snrdwm51.017111310809966
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.73251550119629
summarybgmad12.841580390930176
summarybgmean50.010013580322266
summarybgmedian48.9879264831543
summarybgn3012501.0
summarybgp0530.592838287353516
summarybgp9573.11499786376953
summarybgstdv13.246988296508789
summarycsfk0.40638290638274777
summarycsfmad122.57891845703125
summarycsfmean282.5616760253906
summarycsfmedian276.0615539550781
summarycsfn8768.0
summarycsfp05117.33593673706055
summarycsfp95465.72814178466797
summarycsfstdv112.00602722167969
summarygmk0.41049977785764913
summarygmmad55.709022521972656
summarygmmean619.580810546875
summarygmmedian618.4014892578125
summarygmn33768.0
summarygmp05527.7219879150391
summarygmp95717.9418487548828
summarygmstdv57.94731903076172
summarywmk1.4461784159918771
summarywmmad45.261085510253906
summarywmmean994.5759887695312
summarywmmedian1000.0060424804688
summarywmn143676.0
summarywmp05892.3433685302734
summarywmp951071.5409240722656
summarywmstdv53.9483757019043
tpmoverlapcsf0.221213698387146
tpmoverlapgm0.5406021475791931
tpmoverlapwm0.5441676378250122
wm2max0.5998018771187853

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sume7494ef876c5450d19bb6751242556c5
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.